plugin loading

To enable an extension, you simply load the according plugin(s)
using the PHP include_once() function, like you do with the core
ewiki.php script:

   include_once("plugins/email_protect.php");
   include_once("plugins/page/textupload.php");
   ...
   include_once("ewiki.php");

Usually it does not matter, if you load the plugins before or
after the ewiki script. If this makes a difference, the plugin
documentation would mention it.

(include_once() is recommended and standard since R1.02b)

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You cannot modify the README.plugins file, but anyhow any ideas or suggestion should as usually get filed on BugReports, UserSuggestions or even better the README.plugins.Discussion.